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SRR10441345 Sample ID 2062
| Paper identifier | Patel2020robust |
| SRP accession | SRP229758 |
| GEO accession | GSE140365 |
| Samples | SRR10441345 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 141 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | miR-122 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -7 day | 0 day | 7 day |
| Pipeline info and software versions | |
| Sample notes | Labeled "batch 1" |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 15 |
| Read depth after trimming | 33,369,837 |
| Duplication proportion | 0.30668 |
| Proportion reads mapped | 0.9322 |
| Exon/intron ratio | 5.90557 |
| Unique read proportion | 0.79285 |
| Total # Tfit bidirectionals | 42686 |
| # Promoter Tfit bidirectionals | 22351 |
| # Intronic Tfit bidirectionals | 14720 |
| # Intergenic Tfit bidirectionals | 6754 |
| Total # dREG bidirectionals | 26412 |
| # Promoter dREG bidirectionals | 8398 |
| # Intronic dREG bidirectionals | 10010 |
| # Intergenic dREG bidirectionals | 6017 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |