Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10441354 Sample ID 2071
| Paper identifier | Patel2020robust |
| SRP accession | SRP229758 |
| GEO accession | GSE140365 |
| Samples | SRR10441354 |
| QC score | 3 |
| Replicate | 3 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 60 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 974 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | miR-155 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -7 day | 0 day | 7 day |
| Pipeline info and software versions | |
| Sample notes | Labeled "batch 2" |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 4 |
| Raw read length | 18 |
| Read depth after trimming | 14,803,208 |
| Duplication proportion | 0.36194 |
| Proportion reads mapped | 0.9903 |
| Exon/intron ratio | 8.31707 |
| Unique read proportion | 0.67857 |
| Total # Tfit bidirectionals | 36377 |
| # Promoter Tfit bidirectionals | 20563 |
| # Intronic Tfit bidirectionals | 12645 |
| # Intergenic Tfit bidirectionals | 4939 |
| Total # dREG bidirectionals | 22071 |
| # Promoter dREG bidirectionals | 10028 |
| # Intronic dREG bidirectionals | 8294 |
| # Intergenic dREG bidirectionals | 3342 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |