DBNascent | Samples

SRR10582182 Sample ID 716

**Data sources**
Paper identifier	Fan2020drb
SRP accession	SRP234556
GEO accession	GSE141373
Samples	SRR10582182

**Technical details**
QC score	1
Replicate	1
Protocol	TT-seq
Library prep	random primed
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	127 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	920 Kb
dREG bidirectional regions	BED file	374 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MV4-11
Clone/Individual
Strain
Genotype	Cdk13 F791G/F791G
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	4-thiouridine (1 mM)	-5 min	0 min	5 min
vehicle	DMSO	-25 min	-5 min	20 min

**Extended notes**
Pipeline info and software versions
Sample notes	4sU-seq; Mutants are sensitive to 1-NM-PP1
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	75
Read depth after trimming	33,987,024
Duplication proportion	0.25895
Proportion reads mapped	0.8622
Exon/intron ratio	3.02672
Unique read proportion	0.85284

**Bidirectionals**
Total # Tfit bidirectionals	10464
# Promoter Tfit bidirectionals	4177
# Intronic Tfit bidirectionals	4418
# Intergenic Tfit bidirectionals	772
Total # dREG bidirectionals	8625
# Promoter dREG bidirectionals	3740
# Intronic dREG bidirectionals	2911
# Intergenic dREG bidirectionals	1114
Part of Tfit master merge?	False
Part of dREG master merge?	False