DBNascent | Samples

SRR10582190 Sample ID 724

**Data sources**
Paper identifier	Fan2020drb
SRP accession	SRP234556
GEO accession	GSE141373
Samples	SRR10582190

**Technical details**
QC score	1
Replicate	1
Protocol	TT-seq
Library prep	random primed
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	112 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	367 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MV4-11
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	1-NM-PP1 (10 microM)	-25 min	-5 min	20 min
treatment	4-thiouridine (1 mM)	-5 min	0 min	5 min

**Extended notes**
Pipeline info and software versions
Sample notes	4sU-seq
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	75
Read depth after trimming	31,455,870
Duplication proportion	0.32346
Proportion reads mapped	0.8714
Exon/intron ratio	2.34774
Unique read proportion	0.81277

**Bidirectionals**
Total # Tfit bidirectionals	12870
# Promoter Tfit bidirectionals	4186
# Intronic Tfit bidirectionals	6599
# Intergenic Tfit bidirectionals	959
Total # dREG bidirectionals	8504
# Promoter dREG bidirectionals	3374
# Intronic dREG bidirectionals	3086
# Intergenic dREG bidirectionals	1016
Part of Tfit master merge?	False
Part of dREG master merge?	False