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SRR10582205 Sample ID 729
| Paper identifier | Fan2020drb |
| SRP accession | SRP234556 |
| GEO accession | GSE141373 |
| Samples | SRR10582205 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MV4-11 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | DRB (100 microM) | -4 hr | 0 hr | 4 hr |
| treatment | THZ531 (100 nM) | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 3 |
| Raw read length | 75 |
| Read depth after trimming | 25,434,212 |
| Duplication proportion | 0.68368 |
| Proportion reads mapped | 0.8893 |
| Exon/intron ratio | 6.50852 |
| Unique read proportion | 0.35539 |
| Total # Tfit bidirectionals | 28022 |
| # Promoter Tfit bidirectionals | 12110 |
| # Intronic Tfit bidirectionals | 11606 |
| # Intergenic Tfit bidirectionals | 3555 |
| Total # dREG bidirectionals | 16691 |
| # Promoter dREG bidirectionals | 5664 |
| # Intronic dREG bidirectionals | 7348 |
| # Intergenic dREG bidirectionals | 2763 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |