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SRR10582251 Sample ID 742
| Paper identifier | Fan2020drb |
| SRP accession | SRP234556 |
| GEO accession | GSE141373 |
| Samples | SRR10582251 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 117 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 429 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MV4-11 |
| Clone/Individual | |
| Strain | |
| Genotype | Cdk12 F813G/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | DRB (100 microM) | -285 min | -45 min | 4 hr |
| vehicle | DMSO | -285 min | -45 min | 4 hr |
| Pipeline info and software versions | |
| Sample notes | Mutants are sensitive to 1-NM-PP1 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 25,877,961 |
| Duplication proportion | 0.24916 |
| Proportion reads mapped | 0.9529 |
| Exon/intron ratio | 4.01689 |
| Unique read proportion | 0.84838 |
| Total # Tfit bidirectionals | 17048 |
| # Promoter Tfit bidirectionals | 4698 |
| # Intronic Tfit bidirectionals | 8266 |
| # Intergenic Tfit bidirectionals | 2585 |
| Total # dREG bidirectionals | 9890 |
| # Promoter dREG bidirectionals | 3424 |
| # Intronic dREG bidirectionals | 4253 |
| # Intergenic dREG bidirectionals | 1687 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |