Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10582256 Sample ID 747
| Paper identifier | Fan2020drb |
| SRP accession | SRP234556 |
| GEO accession | GSE141373 |
| Samples | SRR10582256 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MV4-11 |
| Clone/Individual | |
| Strain | |
| Genotype | Cdk13 F791G/F791G |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 1-NM-PP1 (10 microM) | -285 min | -45 min | 4 hr |
| treatment | DRB (100 microM) | -285 min | -45 min | 4 hr |
| Pipeline info and software versions | |
| Sample notes | Mutants are sensitive to 1-NM-PP1; Sample title doesn't match mutant metadata - used title info |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 24,744,019 |
| Duplication proportion | 0.28964 |
| Proportion reads mapped | 0.9515 |
| Exon/intron ratio | 4.37305 |
| Unique read proportion | 0.80935 |
| Total # Tfit bidirectionals | 20148 |
| # Promoter Tfit bidirectionals | 5998 |
| # Intronic Tfit bidirectionals | 9539 |
| # Intergenic Tfit bidirectionals | 3154 |
| Total # dREG bidirectionals | 12067 |
| # Promoter dREG bidirectionals | 4155 |
| # Intronic dREG bidirectionals | 5010 |
| # Intergenic dREG bidirectionals | 2157 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |