DBNascent | Samples

SRR10582256 Sample ID 747

**Data sources**
Paper identifier	Fan2020drb
SRP accession	SRP234556
GEO accession	GSE141373
Samples	SRR10582256

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	524 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MV4-11
Clone/Individual
Strain
Genotype	Cdk13 F791G/F791G
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	1-NM-PP1 (10 microM)	-285 min	-45 min	4 hr
treatment	DRB (100 microM)	-285 min	-45 min	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Mutants are sensitive to 1-NM-PP1; Sample title doesn't match mutant metadata - used title info
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	75
Read depth after trimming	24,744,019
Duplication proportion	0.28964
Proportion reads mapped	0.9515
Exon/intron ratio	4.37305
Unique read proportion	0.80935

**Bidirectionals**
Total # Tfit bidirectionals	20148
# Promoter Tfit bidirectionals	5998
# Intronic Tfit bidirectionals	9539
# Intergenic Tfit bidirectionals	3154
Total # dREG bidirectionals	12067
# Promoter dREG bidirectionals	4155
# Intronic dREG bidirectionals	5010
# Intergenic dREG bidirectionals	2157
Part of Tfit master merge?	False
Part of dREG master merge?	False