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SRR10601204 Sample ID 1012
| Paper identifier | Ikegami2020phosphorylated |
| SRP accession | SRP140974 |
| GEO accession | GSE113350 |
| Samples | SRR10601204 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 215 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 710 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | BJ5ta |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 41 |
| Read depth after trimming | 34,594,863 |
| Duplication proportion | 0.22731 |
| Proportion reads mapped | 0.965 |
| Exon/intron ratio | 3.37676 |
| Unique read proportion | 0.65545 |
| Total # Tfit bidirectionals | 22520 |
| # Promoter Tfit bidirectionals | 10537 |
| # Intronic Tfit bidirectionals | 8996 |
| # Intergenic Tfit bidirectionals | 2618 |
| Total # dREG bidirectionals | 16378 |
| # Promoter dREG bidirectionals | 6490 |
| # Intronic dREG bidirectionals | 6607 |
| # Intergenic dREG bidirectionals | 2576 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |