DBNascent | Samples

SRR10669530 Sample ID 233

**Data sources**
Paper identifier	Bi2020enhancer
SRP accession	SRP188708
GEO accession	GSE128452
Samples	SRR10669530

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	674 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	T47D
Clone/Individual
Strain
Genotype	dox-inducible Jun (stable); shRNA Gata3 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	54
Read depth after trimming	41,755,912
Duplication proportion	0.6115
Proportion reads mapped	0.8795
Exon/intron ratio	3.9912
Unique read proportion	0.52835

**Bidirectionals**
Total # Tfit bidirectionals	24300
# Promoter Tfit bidirectionals	8711
# Intronic Tfit bidirectionals	10780
# Intergenic Tfit bidirectionals	3434
Total # dREG bidirectionals	15646
# Promoter dREG bidirectionals	7381
# Intronic dREG bidirectionals	5535
# Intergenic dREG bidirectionals	2540
Part of Tfit master merge?	True
Part of dREG master merge?	True