DBNascent | Samples

SRR10669531 Sample ID 234

**Data sources**
Paper identifier	Bi2020enhancer
SRP accession	SRP188708
GEO accession	GSE128452
Samples	SRR10669531

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	726 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	T47D
Clone/Individual
Strain
Genotype	dox-inducible Jun (stable); shRNA Gata3 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	54
Read depth after trimming	47,955,982
Duplication proportion	0.59616
Proportion reads mapped	0.8826
Exon/intron ratio	3.7421
Unique read proportion	0.5663

**Bidirectionals**
Total # Tfit bidirectionals	23792
# Promoter Tfit bidirectionals	8568
# Intronic Tfit bidirectionals	10260
# Intergenic Tfit bidirectionals	3697
Total # dREG bidirectionals	16829
# Promoter dREG bidirectionals	7415
# Intronic dREG bidirectionals	6272
# Intergenic dREG bidirectionals	2987
Part of Tfit master merge?	True
Part of dREG master merge?	True