DBNascent | Samples

SRR10669539 Sample ID 2311

**Data sources**
Paper identifier	Smith2021peppro
SRP accession	SRP236879
GEO accession	GSE141843
Samples	SRR10669539

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	131 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	910 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H9
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	romidepsin (200 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	No library details specified, cites Sathyan2019
Analysis notes	Ran qc redo nextflow; Previous identifier until 6/15/21 was Guertin2019unpublished, some documentation reflects that

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	35
Read depth after trimming	25,790,563
Duplication proportion	0.17567
Proportion reads mapped	0.6269
Exon/intron ratio	4.74373
Unique read proportion	0.75042

**Bidirectionals**
Total # Tfit bidirectionals	30203
# Promoter Tfit bidirectionals	15495
# Intronic Tfit bidirectionals	11325
# Intergenic Tfit bidirectionals	4439
Total # dREG bidirectionals	20924
# Promoter dREG bidirectionals	9470
# Intronic dREG bidirectionals	8456
# Intergenic dREG bidirectionals	3036
Part of Tfit master merge?	True
Part of dREG master merge?	True