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SRR10737798 Sample ID 2446
| Paper identifier | Tena2020induction |
| SRP accession | SRP238160 |
| GEO accession | GSE142312 |
| Samples | SRR10737798 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 130 Mb |
| Stranded gene read counts | TXT file | 927 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | ESC |
| Clone/Individual | line 1 |
| Strain | |
| Genotype | Xrcc4 -/-; p53 -/-; recurrent genomic break clusters |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 48,876,504 |
| Duplication proportion | 0.50455 |
| Proportion reads mapped | 0.7956 |
| Exon/intron ratio | 2.18502 |
| Unique read proportion | 0.67151 |
| Total # Tfit bidirectionals | 51201 |
| # Promoter Tfit bidirectionals | 8999 |
| # Intronic Tfit bidirectionals | 18043 |
| # Intergenic Tfit bidirectionals | 17975 |
| Total # dREG bidirectionals | 34287 |
| # Promoter dREG bidirectionals | 5885 |
| # Intronic dREG bidirectionals | 11201 |
| # Intergenic dREG bidirectionals | 14009 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |