Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10737800 Sample ID 2448
| Paper identifier | Tena2020induction |
| SRP accession | SRP238160 |
| GEO accession | GSE142312 |
| Samples | SRR10737800 |
| QC score | 2 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 132 Mb |
| Stranded gene read counts | TXT file | 927 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | ESC |
| Clone/Individual | line 1 |
| Strain | |
| Genotype | Xrcc4 -/-; p53 -/-; recurrent genomic break clusters |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 48,925,816 |
| Duplication proportion | 0.50239 |
| Proportion reads mapped | 0.8019 |
| Exon/intron ratio | 2.1693 |
| Unique read proportion | 0.67533 |
| Total # Tfit bidirectionals | 51305 |
| # Promoter Tfit bidirectionals | 9146 |
| # Intronic Tfit bidirectionals | 18106 |
| # Intergenic Tfit bidirectionals | 18088 |
| Total # dREG bidirectionals | 34503 |
| # Promoter dREG bidirectionals | 5908 |
| # Intronic dREG bidirectionals | 11224 |
| # Intergenic dREG bidirectionals | 14225 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |