DBNascent | Samples

SRR10737807 Sample ID 2455

**Data sources**
Paper identifier	Tena2020induction
SRP accession	SRP238160
GEO accession	GSE142312
Samples	SRR10737807

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	152 Mb
Stranded gene read counts	TXT file	929 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	NSPC
Clone/Individual	line 2
Strain
Genotype	Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	neural progenitor cells differentiated from ESC line 2
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	47,141,251
Duplication proportion	0.41794
Proportion reads mapped	0.8765
Exon/intron ratio	2.18269
Unique read proportion	0.80185

**Bidirectionals**
Total # Tfit bidirectionals	28019
# Promoter Tfit bidirectionals	7343
# Intronic Tfit bidirectionals	11890
# Intergenic Tfit bidirectionals	5004
Total # dREG bidirectionals	24142
# Promoter dREG bidirectionals	6062
# Intronic dREG bidirectionals	8546
# Intergenic dREG bidirectionals	6137
Part of Tfit master merge?	True
Part of dREG master merge?	True