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SRR10760417 Sample ID 1507
| Paper identifier | Li2020human |
| SRP accession | SRP226233 |
| GEO accession | GSE139114 |
| Samples | SRR10760417 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | S. frugiperda |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | foreskin fibroblast |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | HCMV strain TB40/E IE2 (MOI 3) | -72 hr | 0 hr | 3 day |
| treatment | flavopiridol (1 microM) | -1 hr | 0 hr | 1 hr |
| treatment | phosphonoformic acid (400 microg/mL) | -72 hr | 0 hr | 3 day |
| Pipeline info and software versions | |
| Sample notes | HCMV strains have different genes tagged with degron; Strain nomenclature not consistent between paper and GEO |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 35,360,192 |
| Duplication proportion | 0.78925 |
| Proportion reads mapped | 0.2298 |
| Exon/intron ratio | 3.95833 |
| Unique read proportion | 0.1056 |
| Total # Tfit bidirectionals | 824 |
| # Promoter Tfit bidirectionals | 343 |
| # Intronic Tfit bidirectionals | 253 |
| # Intergenic Tfit bidirectionals | 75 |
| Total # dREG bidirectionals | 184 |
| # Promoter dREG bidirectionals | 37 |
| # Intronic dREG bidirectionals | 25 |
| # Intergenic dREG bidirectionals | 97 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |