DBNascent | Samples

SRR10836718 Sample ID 175

**Data sources**
Paper identifier	Ba2020ctcf
SRP accession	SRP239169
GEO accession	GSE142780
Samples	SRR10836718

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	126 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	957 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	v-Abl pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag1 -/-; Emu-Bcl2 +; CTCF auxin-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	STI-571 (3 microM)	-4 day	0 day	4 day
treatment	indoleacetic acid (500 microM)	-102 hr	0 hr	102 hr

**Extended notes**
Pipeline info and software versions
Sample notes	STI-571 induces G1, indoleacetic acid induces degradation of targeted protein
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	30,917,339
Duplication proportion	0.26006
Proportion reads mapped	0.8211
Exon/intron ratio	3.01111
Unique read proportion	0.7044

**Bidirectionals**
Total # Tfit bidirectionals	33450
# Promoter Tfit bidirectionals	10237
# Intronic Tfit bidirectionals	12491
# Intergenic Tfit bidirectionals	6092
Total # dREG bidirectionals	21758
# Promoter dREG bidirectionals	4900
# Intronic dREG bidirectionals	7862
# Intergenic dREG bidirectionals	5777
Part of Tfit master merge?	True
Part of dREG master merge?	True