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SRR10836720 Sample ID 177
| Paper identifier | Ba2020ctcf |
| SRP accession | SRP239169 |
| GEO accession | GSE142780 |
| Samples | SRR10836720 |
| QC score | 1 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 218 Mb |
| Stranded gene read counts | TXT file | 919 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 969 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | v-Abl pro B cell |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Rag1 -/-; Emu-Bcl2 +; CTCF auxin-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr |
| Pipeline info and software versions | |
| Sample notes | STI-571 induces G1, indoleacetic acid induces degradation of targeted protein |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 76 |
| Read depth after trimming | 35,940,082 |
| Duplication proportion | 0.15975 |
| Proportion reads mapped | 0.8323 |
| Exon/intron ratio | 2.47035 |
| Unique read proportion | 0.80087 |
| Total # Tfit bidirectionals | 33601 |
| # Promoter Tfit bidirectionals | 10286 |
| # Intronic Tfit bidirectionals | 11627 |
| # Intergenic Tfit bidirectionals | 6808 |
| Total # dREG bidirectionals | 22020 |
| # Promoter dREG bidirectionals | 5017 |
| # Intronic dREG bidirectionals | 7992 |
| # Intergenic dREG bidirectionals | 6098 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |