DBNascent | Samples

SRR10836725 Sample ID 182

**Data sources**
Paper identifier	Ba2020ctcf
SRP accession	SRP239169
GEO accession	GSE142780
Samples	SRR10836725

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	527 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	v-Abl pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	STI-571 (3 microM)	-4 day	0 day	4 day
vehicle	DMSO	-102 hr	-96 hr	6 hr

**Extended notes**
Pipeline info and software versions
Sample notes	STI-571 induces G1
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	76
Read depth after trimming	25,773,980
Duplication proportion	0.81205
Proportion reads mapped	0.8091
Exon/intron ratio	2.00748
Unique read proportion	0.29921

**Bidirectionals**
Total # Tfit bidirectionals	18537
# Promoter Tfit bidirectionals	5522
# Intronic Tfit bidirectionals	7446
# Intergenic Tfit bidirectionals	2986
Total # dREG bidirectionals	12185
# Promoter dREG bidirectionals	3949
# Intronic dREG bidirectionals	4124
# Intergenic dREG bidirectionals	2430
Part of Tfit master merge?	True
Part of dREG master merge?	True