DBNascent | Samples

SRR10836726 Sample ID 183

**Data sources**
Paper identifier	Ba2020ctcf
SRP accession	SRP239169
GEO accession	GSE142780
Samples	SRR10836726

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	75 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	778 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	v-Abl pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	STI-571 (3 microM)	-4 day	0 day	4 day
treatment	indoleacetic acid (500 microM)	-102 hr	0 hr	102 hr

**Extended notes**
Pipeline info and software versions
Sample notes	STI-571 induces G1, indoleacetic acid induces degradation of targeted protein
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	76
Read depth after trimming	31,797,400
Duplication proportion	0.70883
Proportion reads mapped	0.7951
Exon/intron ratio	1.96906
Unique read proportion	0.44212

**Bidirectionals**
Total # Tfit bidirectionals	27739
# Promoter Tfit bidirectionals	7627
# Intronic Tfit bidirectionals	11408
# Intergenic Tfit bidirectionals	5177
Total # dREG bidirectionals	17899
# Promoter dREG bidirectionals	4846
# Intronic dREG bidirectionals	6595
# Intergenic dREG bidirectionals	4285
Part of Tfit master merge?	True
Part of dREG master merge?	True