DBNascent | Samples

SRR10897091 Sample ID 1761

**Data sources**
Paper identifier	Ma2020super
SRP accession	SRP242004
GEO accession	GSE143691
Samples	SRR10897091

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	48 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	298 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A549
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	cisplatin (800 microM)	-1 day	0 day	1 day
treatment	cisplatin (800 microM)	-3 day	-1 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle not specified, but often PBS for cisplatin
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	23,575,262
Duplication proportion	0.64753
Proportion reads mapped	0.6269
Exon/intron ratio	3.775
Unique read proportion	0.39929

**Bidirectionals**
Total # Tfit bidirectionals	17066
# Promoter Tfit bidirectionals	5787
# Intronic Tfit bidirectionals	7707
# Intergenic Tfit bidirectionals	1896
Total # dREG bidirectionals	6909
# Promoter dREG bidirectionals	3874
# Intronic dREG bidirectionals	2168
# Intergenic dREG bidirectionals	790
Part of Tfit master merge?	True
Part of dREG master merge?	True