Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10915528 Sample ID 199
| Paper identifier | Barbieri2020rapid |
| SRP accession | SRP242477 |
| GEO accession | GSE143844 |
| Samples | SRR10915528 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq variant |
| Library prep | random primed |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 47 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 822 Kb |
| dREG bidirectional regions | BED file | 177 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | EGF (100 ng/mL) | -15 min | 0 min | 15 min |
| Pipeline info and software versions | |
| Sample notes | fastGRO (run-on with 4sU); 20 million cells, biotin-HPDP for biotinylation |
| Analysis notes | Only SE and flipped sample in paper |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 56,832,903 |
| Duplication proportion | 0.80761 |
| Proportion reads mapped | 0.5394 |
| Exon/intron ratio | 4.42642 |
| Unique read proportion | 0.25081 |
| Total # Tfit bidirectionals | 9352 |
| # Promoter Tfit bidirectionals | 2755 |
| # Intronic Tfit bidirectionals | 3978 |
| # Intergenic Tfit bidirectionals | 1270 |
| Total # dREG bidirectionals | 4108 |
| # Promoter dREG bidirectionals | 1719 |
| # Intronic dREG bidirectionals | 1534 |
| # Intergenic dREG bidirectionals | 700 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |