Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR11024609 Sample ID 140
| Paper identifier | Aoi2020nelf |
| SRP accession | SRP247346 |
| GEO accession | GSE144786 |
| Samples | SRR11024609 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 86 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | DLD1 Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | Tir1 (Flp knock-in); Nelf-C auxin-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | auxin (500 microM) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 49,420,793 |
| Duplication proportion | 0.73632 |
| Proportion reads mapped | 0.8124 |
| Exon/intron ratio | 3.83893 |
| Unique read proportion | 0.52184 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |