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SRR11024622 Sample ID 153
| Paper identifier | Aoi2020nelf |
| SRP accession | SRP247346 |
| GEO accession | GSE144786 |
| Samples | SRR11024622 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 261 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | DLD1 Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | Tir1 (Flp knock-in); Nelf-C auxin-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | NVP2 (250 nM) | -3 hr | -2 hr | 1 hr |
| treatment | auxin (500 microM) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | treatment conditions not well-defined - mostly in figure legends, but still ambiguous |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 137,392,834 |
| Duplication proportion | 0.67468 |
| Proportion reads mapped | 0.897 |
| Exon/intron ratio | 4.04545 |
| Unique read proportion | 0.52405 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |