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SRR11024633 Sample ID 163
| Paper identifier | Aoi2020nelf |
| SRP accession | SRP247346 |
| GEO accession | GSE144786 |
| Samples | SRR11024633 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-cap |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 157 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | DLD1 Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | Tir1 (Flp knock-in); Nelf-C auxin-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | auxin (500 microM) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 5 |
| Raw read length | 35 |
| Read depth after trimming | 120,149,779 |
| Duplication proportion | 0.57645 |
| Proportion reads mapped | 0.8674 |
| Exon/intron ratio | 12.8303 |
| Unique read proportion | 0.4418 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |