DBNascent | Samples

SRR1105736 Sample ID 51

**Data sources**
Paper identifier	Allen2014global
SRP accession	SRP035278
GEO accession	GSE53964
Samples	SRR1105736

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	55 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	679 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	54,636,150
Duplication proportion	0.88664
Proportion reads mapped	0.8586
Exon/intron ratio	3.71858
Unique read proportion	0.31967

**Bidirectionals**
Total # Tfit bidirectionals	23858
# Promoter Tfit bidirectionals	11356
# Intronic Tfit bidirectionals	8829
# Intergenic Tfit bidirectionals	3050
Total # dREG bidirectionals	15716
# Promoter dREG bidirectionals	7332
# Intronic dREG bidirectionals	5135
# Intergenic dREG bidirectionals	2577
Part of Tfit master merge?	True
Part of dREG master merge?	True