DBNascent | Samples

SRR1105739 Sample ID 54

**Data sources**
Paper identifier	Allen2014global
SRP accession	SRP035278
GEO accession	GSE53964
Samples	SRR1105739

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	214 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (10 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	148,186,888
Duplication proportion	0.79063
Proportion reads mapped	0.9355
Exon/intron ratio	3.38991
Unique read proportion	0.53761

**Bidirectionals**
Total # Tfit bidirectionals	50624
# Promoter Tfit bidirectionals	19493
# Intronic Tfit bidirectionals	18545
# Intergenic Tfit bidirectionals	11556
Total # dREG bidirectionals	37972
# Promoter dREG bidirectionals	8940
# Intronic dREG bidirectionals	16075
# Intergenic dREG bidirectionals	11563
Part of Tfit master merge?	True
Part of dREG master merge?	True