DBNascent | Samples

SRR1105740 Sample ID 55

**Data sources**
Paper identifier	Allen2014global
SRP	SRP035278
Samples	SRR1105740

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	251 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype	p53 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	179,414,804
Duplication proportion	0.79917
Proportion reads mapped	0.9294
Exon/intron ratio	3.66674
Unique read proportion	0.55552

**Bidirectionals**
Total # Tfit bidirectionals	47151
# Promoter Tfit bidirectionals	19425
# Intronic Tfit bidirectionals	15456
# Intergenic Tfit bidirectionals	11633
Total # dREG bidirectionals	40888
# Promoter dREG bidirectionals	9124
# Intronic dREG bidirectionals	17213
# Intergenic dREG bidirectionals	13056
Part of Tfit master merge?	True
Part of dREG master merge?	True