DBNascent | Samples

SRR1105741 Sample ID 56

**Data sources**
Paper identifier	Allen2014global
SRP accession	SRP035278
GEO accession	GSE53964
Samples	SRR1105741

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	348 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype	p53 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (10 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	159,917,000
Duplication proportion	0.64267
Proportion reads mapped	0.9368
Exon/intron ratio	3.6153
Unique read proportion	0.59871

**Bidirectionals**
Total # Tfit bidirectionals	53588
# Promoter Tfit bidirectionals	21024
# Intronic Tfit bidirectionals	17501
# Intergenic Tfit bidirectionals	14725
Total # dREG bidirectionals	52586
# Promoter dREG bidirectionals	9334
# Intronic dREG bidirectionals	23229
# Intergenic dREG bidirectionals	18192
Part of Tfit master merge?	True
Part of dREG master merge?	True