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SRR11059470 Sample ID 1093
| Paper identifier | Johnston2020nascent |
| SRP accession | SRP248057 |
| GEO accession | GSE145071 |
| Samples | SRR11059470 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | THP1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | INCB059872 (25 nM) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 19,434,787 |
| Duplication proportion | 0.55582 |
| Proportion reads mapped | 0.9051 |
| Exon/intron ratio | 4.47579 |
| Unique read proportion | 0.48587 |
| Total # Tfit bidirectionals | 38211 |
| # Promoter Tfit bidirectionals | 10854 |
| # Intronic Tfit bidirectionals | 16661 |
| # Intergenic Tfit bidirectionals | 10132 |
| Total # dREG bidirectionals | 30026 |
| # Promoter dREG bidirectionals | 10902 |
| # Intronic dREG bidirectionals | 11913 |
| # Intergenic dREG bidirectionals | 7619 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |