SRR1121678 Sample ID 684

Data sources
Paper identifier Erhard2015nascent
SRP accession SRP035475
GEO accession GSE54166
Samples SRR1121678
Technical details
QC score 2
Replicate 1
Protocol GRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 82 Mb
Stranded gene read counts TXT file
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism Z. mays
Sample type tissue
Cell type seedling
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes 10 pooled 8-day seedlings; library prep cited Core2008
Analysis notes
Sample metrics
Sample QC score 2
Sample NRO score 1
Raw read length 50
Read depth after trimming 50,083,449
Duplication proportion 0.54023
Proportion reads mapped 0.5176
Exon/intron ratio 1.7322
Unique read proportion 0.5282
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False