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SRR1121679 Sample ID 685
| Paper identifier | Erhard2015nascent |
| SRP accession | SRP035475 |
| GEO accession | GSE54166 |
| Samples | SRR1121679 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 80 Mb |
| Organism | Z. mays |
| Sample type | tissue |
| Cell type | seedling |
| Clone/Individual | |
| Strain | |
| Genotype | Rpd1 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | 10 pooled 8-day seedlings; library prep cited Core2008 |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 50,269,093 |
| Duplication proportion | 0.51359 |
| Proportion reads mapped | 0.4719 |
| Exon/intron ratio | 1.74517 |
| Unique read proportion | 0.54985 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |