DBNascent | Samples

SRR11314417 Sample ID 2035

**Data sources**
Paper identifier	Park2020global
SRP accession	SRP252991
GEO accession	GSE147063
Samples	SRR11314417

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	135 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	972 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	TRExBCBL1
Clone/Individual
Strain
Genotype	dox-inducible RTA (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Cells stably infected with Kaposi's sarcoma-associated herpesvirus; Activation of herpesvirus gene RTA induces lytic cycle
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	45,313,347
Duplication proportion	0.49509
Proportion reads mapped	0.8943
Exon/intron ratio	2.56576
Unique read proportion	0.65151

**Bidirectionals**
Total # Tfit bidirectionals	36917
# Promoter Tfit bidirectionals	11901
# Intronic Tfit bidirectionals	16733
# Intergenic Tfit bidirectionals	6807
Total # dREG bidirectionals	22300
# Promoter dREG bidirectionals	6759
# Intronic dREG bidirectionals	9042
# Intergenic dREG bidirectionals	5887
Part of Tfit master merge?	True
Part of dREG master merge?	True