DBNascent | Samples

SRR11314418 Sample ID 2036

**Data sources**
Paper identifier	Park2020global
SRP accession	SRP252991
GEO accession	GSE147063
Samples	SRR11314418

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	142 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	858 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	TRExBCBL1
Clone/Individual
Strain
Genotype	dox-inducible RTA (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-1 day	0 day	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	Cells stably infected with Kaposi's sarcoma-associated herpesvirus; Activation of herpesvirus gene RTA induces lytic cycle
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	100
Read depth after trimming	56,396,403
Duplication proportion	0.51922
Proportion reads mapped	0.8429
Exon/intron ratio	2.14694
Unique read proportion	0.57433

**Bidirectionals**
Total # Tfit bidirectionals	29725
# Promoter Tfit bidirectionals	9058
# Intronic Tfit bidirectionals	13535
# Intergenic Tfit bidirectionals	6234
Total # dREG bidirectionals	19776
# Promoter dREG bidirectionals	6362
# Intronic dREG bidirectionals	8178
# Intergenic dREG bidirectionals	4918
Part of Tfit master merge?	True
Part of dREG master merge?	True