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SRR11314418 Sample ID 2036
| Paper identifier | Park2020global |
| SRP accession | SRP252991 |
| GEO accession | GSE147063 |
| Samples | SRR11314418 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | TRExBCBL1 |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible RTA (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | Cells stably infected with Kaposi's sarcoma-associated herpesvirus; Activation of herpesvirus gene RTA induces lytic cycle |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 100 |
| Read depth after trimming | 56,396,403 |
| Duplication proportion | 0.51922 |
| Proportion reads mapped | 0.8429 |
| Exon/intron ratio | 2.14694 |
| Unique read proportion | 0.57433 |
| Total # Tfit bidirectionals | 29725 |
| # Promoter Tfit bidirectionals | 9058 |
| # Intronic Tfit bidirectionals | 13535 |
| # Intergenic Tfit bidirectionals | 6234 |
| Total # dREG bidirectionals | 19776 |
| # Promoter dREG bidirectionals | 6362 |
| # Intronic dREG bidirectionals | 8178 |
| # Intergenic dREG bidirectionals | 4918 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |