DBNascent | Samples

SRR1145801 Sample ID 2598

**Data sources**
Paper identifier	Wang2015epigenetic
SRP accession	SRP035929
GEO accession	GSE54471
Samples	SRR1145801

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	505 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	3 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	CyT49
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Complicated differentiation protocol timecourse; Day 0
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	243,503,915
Duplication proportion	0.54544
Proportion reads mapped	0.7543
Exon/intron ratio	3.04906
Unique read proportion	0.59075

**Bidirectionals**
Total # Tfit bidirectionals	60331
# Promoter Tfit bidirectionals	17523
# Intronic Tfit bidirectionals	21017
# Intergenic Tfit bidirectionals	21378
Total # dREG bidirectionals	67371
# Promoter dREG bidirectionals	10324
# Intronic dREG bidirectionals	28729
# Intergenic dREG bidirectionals	25613
Part of Tfit master merge?	True
Part of dREG master merge?	True