DBNascent | Samples

SRR1145815 Sample ID 2599

**Data sources**
Paper identifier	Wang2015epigenetic
SRP	SRP035929
Samples	SRR1145815

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	74 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	529 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	CyT49
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	pancreatic differentiation protocol	-5 day	0 day	5 day

**Extended notes**
Pipeline info and software versions
Sample notes	Complicated differentiation protocol timecourse; Day 5
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	3
Raw read length	50
Read depth after trimming	50,596,975
Duplication proportion	0.68993
Proportion reads mapped	0.7223
Exon/intron ratio	5.03267
Unique read proportion	0.33974

**Bidirectionals**
Total # Tfit bidirectionals	15928
# Promoter Tfit bidirectionals	7140
# Intronic Tfit bidirectionals	6520
# Intergenic Tfit bidirectionals	1431
Total # dREG bidirectionals	12297
# Promoter dREG bidirectionals	7063
# Intronic dREG bidirectionals	4039
# Intergenic dREG bidirectionals	1314
Part of Tfit master merge?	True
Part of dREG master merge?	True