DBNascent | Samples

SRR1145822 Sample ID 2601

**Data sources**
Paper identifier	Wang2015epigenetic
SRP accession	SRP035929
GEO accession	GSE54471
Samples	SRR1145822

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	95 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	640 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	CyT49
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	pancreatic differentiation protocol	-7 day	0 day	7 day

**Extended notes**
Pipeline info and software versions
Sample notes	Complicated differentiation protocol timecourse; Day 7
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	51,566,093
Duplication proportion	0.60169
Proportion reads mapped	0.7443
Exon/intron ratio	3.8559
Unique read proportion	0.42733

**Bidirectionals**
Total # Tfit bidirectionals	20043
# Promoter Tfit bidirectionals	8214
# Intronic Tfit bidirectionals	8470
# Intergenic Tfit bidirectionals	2745
Total # dREG bidirectionals	14839
# Promoter dREG bidirectionals	7232
# Intronic dREG bidirectionals	5528
# Intergenic dREG bidirectionals	2094
Part of Tfit master merge?	True
Part of dREG master merge?	True