DBNascent | Samples

SRR1145829 Sample ID 2601

**Data sources**
Paper identifier	Wang2015epigenetic
SRP	SRP035929
Samples	SRR1145829

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	100 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	473 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	CyT49
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	pancreatic differentiation protocol	-10 day	0 day	10 day

**Extended notes**
Pipeline info and software versions
Sample notes	Complicated differentiation protocol timecourse; Day 10
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	48,630,784
Duplication proportion	0.57313
Proportion reads mapped	0.7724
Exon/intron ratio	3.558
Unique read proportion	0.46206

**Bidirectionals**
Total # Tfit bidirectionals	15148
# Promoter Tfit bidirectionals	6672
# Intronic Tfit bidirectionals	6324
# Intergenic Tfit bidirectionals	1263
Total # dREG bidirectionals	10987
# Promoter dREG bidirectionals	6100
# Intronic dREG bidirectionals	3740
# Intergenic dREG bidirectionals	1105
Part of Tfit master merge?	True
Part of dREG master merge?	True