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SRR11554718 Sample ID 518
| Paper identifier | Cosby2021recurrent |
| SRP accession | SRP256595 |
| GEO accession | GSE148787 |
| Samples | SRR11554718 |
| QC score | 3 |
| Replicate | 5 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | Yes |
| TDF visualization file | TDF file | 270 Mb |
| Organism | M. velifer |
| Sample type | cell line |
| Cell type | embryonic fibroblast |
| Clone/Individual | rescue clone P4D7 |
| Strain | |
| Genotype | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | Myoluc2.0 closest genome |
| Analysis notes | In db as Cosby2020unpublished until 2/8/21 - all older pipeline reports and out/err scripts reflect that; Can't determine strandedness, extremely messy, genome doesn't match organism and is of poor quality |
| Sample QC score | 3 |
| Sample NRO score | 3 |
| Raw read length | 35 |
| Read depth after trimming | 27,647,781 |
| Duplication proportion | 0.58945 |
| Proportion reads mapped | 0.3995 |
| Exon/intron ratio | 5.61437 |
| Unique read proportion | 0.4214 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |