DBNascent | Samples

SRR1168364 Sample ID 2780

**Data sources**
Paper identifier	Zhang2019arerg
SRP accession	SRP037734
GEO accession	GSE54946
Samples	SRR1168364

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	76 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	691 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Samples treated with charcoal-stripped FBS media for 24 hr before treatment/no treatment
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	36
Read depth after trimming	32,938,098
Duplication proportion	0.66134
Proportion reads mapped	0.8097
Exon/intron ratio	1.72551
Unique read proportion	0.54665

**Bidirectionals**
Total # Tfit bidirectionals	24427
# Promoter Tfit bidirectionals	6817
# Intronic Tfit bidirectionals	12002
# Intergenic Tfit bidirectionals	4688
Total # dREG bidirectionals	16029
# Promoter dREG bidirectionals	6263
# Intronic dREG bidirectionals	6589
# Intergenic dREG bidirectionals	3322
Part of Tfit master merge?	True
Part of dREG master merge?	True