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SRR11785044 Sample ID 1709
| Paper identifier | Liu2021transcription |
| SRP accession | SRP261462 |
| GEO accession | GSE150491 |
| Samples | SRR11785044 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 266 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | CD34+ erythroblast |
| Clone/Individual | sgRNA Aavs1 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | sgRNAs were CRISPRed into genome 32 hours before harvest |
| Analysis notes | Preseq required separate run with -D flag; Previously in DB until 4/19/2021 as Liu2020unpublished - all scripts have been changed, but previous outerr files and logs reflect previous id |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 41 |
| Read depth after trimming | 53,884,958 |
| Duplication proportion | 0.28422 |
| Proportion reads mapped | 0.7951 |
| Exon/intron ratio | 3.94649 |
| Unique read proportion | 0.74265 |
| Total # Tfit bidirectionals | 29940 |
| # Promoter Tfit bidirectionals | 14928 |
| # Intronic Tfit bidirectionals | 10999 |
| # Intergenic Tfit bidirectionals | 5044 |
| Total # dREG bidirectionals | 25257 |
| # Promoter dREG bidirectionals | 7886 |
| # Intronic dREG bidirectionals | 11372 |
| # Intergenic dREG bidirectionals | 5116 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |