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SRR11785048 Sample ID 1713
| Paper identifier | Liu2021transcription |
| SRP accession | SRP261462 |
| GEO accession | GSE150491 |
| Samples | SRR11785048 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 189 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 863 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | CD34+ erythroblast |
| Clone/Individual | sgRNA Aavs1 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | sgRNAs were CRISPRed into genome 72 hours before harvest |
| Analysis notes | Preseq required separate run with -D flag; Previously in DB until 4/19/2021 as Liu2020unpublished - all scripts have been changed, but previous outerr files and logs reflect previous id |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 41 |
| Read depth after trimming | 50,673,433 |
| Duplication proportion | 0.38803 |
| Proportion reads mapped | 0.714 |
| Exon/intron ratio | 4.61649 |
| Unique read proportion | 0.68079 |
| Total # Tfit bidirectionals | 24297 |
| # Promoter Tfit bidirectionals | 13521 |
| # Intronic Tfit bidirectionals | 8614 |
| # Intergenic Tfit bidirectionals | 3001 |
| Total # dREG bidirectionals | 19800 |
| # Promoter dREG bidirectionals | 7634 |
| # Intronic dREG bidirectionals | 8105 |
| # Intergenic dREG bidirectionals | 3349 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |