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SRR11793827 Sample ID 1123
| Paper identifier | Judd2020unpublished |
| SRP accession | SRP261723 |
| GEO accession | GSE150625 |
| Samples | SRR11793827 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | qPRO-Seq (streamlined enrichment/adapter ligation); 1 million cells; bioRxiv https://doi.org/10.1101/2020.05.18.102277 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 42 |
| Read depth after trimming | 35,454,833 |
| Duplication proportion | 0.35842 |
| Proportion reads mapped | 0.6623 |
| Exon/intron ratio | 2.92158 |
| Unique read proportion | 0.67909 |
| Total # Tfit bidirectionals | 19827 |
| # Promoter Tfit bidirectionals | 7186 |
| # Intronic Tfit bidirectionals | 8045 |
| # Intergenic Tfit bidirectionals | 4107 |
| Total # dREG bidirectionals | 13706 |
| # Promoter dREG bidirectionals | 6399 |
| # Intronic dREG bidirectionals | 4860 |
| # Intergenic dREG bidirectionals | 2685 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |