DBNascent | Samples

SRR11793830 Sample ID 1126

**Data sources**
Paper identifier	Judd2020unpublished
SRP accession	SRP261723
GEO accession	GSE150625
Samples	SRR11793830

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	81 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	899 Kb
dREG bidirectional regions	BED file	282 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	qPRO-Seq (streamlined enrichment/adapter ligation); 1 million cells; bioRxiv https://doi.org/10.1101/2020.05.18.102277
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	42
Read depth after trimming	31,445,529
Duplication proportion	0.69573
Proportion reads mapped	0.6389
Exon/intron ratio	3.11111
Unique read proportion	0.41393

**Bidirectionals**
Total # Tfit bidirectionals	10226
# Promoter Tfit bidirectionals	3491
# Intronic Tfit bidirectionals	4127
# Intergenic Tfit bidirectionals	1773
Total # dREG bidirectionals	6571
# Promoter dREG bidirectionals	3654
# Intronic dREG bidirectionals	1990
# Intergenic dREG bidirectionals	1137
Part of Tfit master merge?	True
Part of dREG master merge?	True