DBNascent | Samples

SRR11802026 Sample ID 1861

**Data sources**
Paper identifier	Mukai2020chromatin
SRP accession	SRP261959
GEO accession	GSE150705
Samples	SRR11802026

**Technical details**
QC score	2
Replicate	1
Protocol	ChRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	107 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	C. lupus familiaris
Sample type	tissue
Cell type	spleen hemangiosarcoma
Clone/Individual
Strain	golden retriever
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	CHRO-seq, library prep only refers to Chu2018chromatin
Analysis notes	Some samples sparse due to high adapter contamination and low mapping; force trimming did not help, so just stuck with normal pipeline

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	50,792,984
Duplication proportion	0.64844
Proportion reads mapped	0.4152
Exon/intron ratio	4.53399
Unique read proportion	0.53983

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False