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SRR11811942 Sample ID 1003
| Paper identifier | Huang2020integrator |
| SRP accession | SRP262320 |
| GEO accession | GSE150844 |
| Samples | SRR11811942 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | H. sapiens |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 41 Mb |
| Stranded gene read counts | TXT file | 718 Kb |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | DL1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dsRNA beta-galactosidase (10 microg/well) | -60 hr | 0 hr | 60 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 42 |
| Read depth after trimming | 7,869,485 |
| Duplication proportion | 0.50921 |
| Proportion reads mapped | 0.671 |
| Exon/intron ratio | 3.55958 |
| Unique read proportion | 0.27218 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |