DBNascent | Samples

SRR1192053 Sample ID 1078

**Data sources**
Paper identifier	Jin2014chem
SRP accession	SRP040117
GEO accession	GSE55903
Samples	SRR1192053

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	121 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	639 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr
vehicle	DMSO (0.1%)	-3 hr	-1 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	52,912,493
Duplication proportion	0.62055
Proportion reads mapped	0.906
Exon/intron ratio	3.02734
Unique read proportion	0.42704

**Bidirectionals**
Total # Tfit bidirectionals	16973
# Promoter Tfit bidirectionals	8478
# Intronic Tfit bidirectionals	6458
# Intergenic Tfit bidirectionals	1945
Total # dREG bidirectionals	14807
# Promoter dREG bidirectionals	6969
# Intronic dREG bidirectionals	5608
# Intergenic dREG bidirectionals	2076
Part of Tfit master merge?	True
Part of dREG master merge?	True