DBNascent | Samples

SRR1192054 Sample ID 1079

**Data sources**
Paper identifier	Jin2014chem
SRP	SRP040117
Samples	SRR1192054

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	108 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	570 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.1%)	-3 hr	-1 hr	2 hr
vehicle	ethanol (0.1%)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	44,031,095
Duplication proportion	0.6002
Proportion reads mapped	0.9088
Exon/intron ratio	2.95627
Unique read proportion	0.43859

**Bidirectionals**
Total # Tfit bidirectionals	16379
# Promoter Tfit bidirectionals	7937
# Intronic Tfit bidirectionals	6360
# Intergenic Tfit bidirectionals	1886
Total # dREG bidirectionals	13212
# Promoter dREG bidirectionals	6560
# Intronic dREG bidirectionals	4731
# Intergenic dREG bidirectionals	1845
Part of Tfit master merge?	True
Part of dREG master merge?	True