DBNascent | Samples

SRR1192055 Sample ID 1080

**Data sources**
Paper identifier	Jin2014chem
SRP accession	SRP040117
GEO accession	GSE55903
Samples	SRR1192055

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	111 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	575 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	SD70 (10 microM)	-3 hr	-1 hr	2 hr
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	44,765,767
Duplication proportion	0.58503
Proportion reads mapped	0.905
Exon/intron ratio	3.0974
Unique read proportion	0.45444

**Bidirectionals**
Total # Tfit bidirectionals	16139
# Promoter Tfit bidirectionals	8148
# Intronic Tfit bidirectionals	6001
# Intergenic Tfit bidirectionals	1778
Total # dREG bidirectionals	13332
# Promoter dREG bidirectionals	6501
# Intronic dREG bidirectionals	4893
# Intergenic dREG bidirectionals	1794
Part of Tfit master merge?	True
Part of dREG master merge?	True