DBNascent | Samples

SRR11936620 Sample ID 543

**Data sources**
Paper identifier	Dai2020loop
SRP accession	SRP266165
GEO accession	GSE151907
Samples	SRR11936620

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	148 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	850 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag1 -/-; Igh VH inversion
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-3 day	0 day	3 day
treatment	STI-571 (3 microM)	-4 day	0 day	4 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	76
Read depth after trimming	28,840,048
Duplication proportion	0.26287
Proportion reads mapped	0.765
Exon/intron ratio	2.16237
Unique read proportion	0.67463

**Bidirectionals**
Total # Tfit bidirectionals	33735
# Promoter Tfit bidirectionals	8359
# Intronic Tfit bidirectionals	14214
# Intergenic Tfit bidirectionals	6637
Total # dREG bidirectionals	19552
# Promoter dREG bidirectionals	4698
# Intronic dREG bidirectionals	7652
# Intergenic dREG bidirectionals	4513
Part of Tfit master merge?	True
Part of dREG master merge?	True