DBNascent | Samples

SRR12083664 Sample ID 280

**Data sources**
Paper identifier	Blumberg2021characterizing
SRP accession	SRP268709
GEO accession	GSE153200
Samples	SRR12083664

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	155 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	300 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previously in DB until 4/19/2021 as Blumberg2020unpublished - scripts have been changed, but all previous outerr and logs reflect previous ID

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	150
Read depth after trimming	40,574,700
Duplication proportion	0.13358
Proportion reads mapped	0.4897
Exon/intron ratio	2.47684
Unique read proportion	0.87839

**Bidirectionals**
Total # Tfit bidirectionals	16656
# Promoter Tfit bidirectionals	6823
# Intronic Tfit bidirectionals	7753
# Intergenic Tfit bidirectionals	1745
Total # dREG bidirectionals	6963
# Promoter dREG bidirectionals	3169
# Intronic dREG bidirectionals	2656
# Intergenic dREG bidirectionals	1029
Part of Tfit master merge?	True
Part of dREG master merge?	True